- Image Preparation: Preparing your figures for publications – EM University
- CryoEM101
- Eva Nogales (UC Berkeley): Introduction to Electron Microscopy (47 min)
- Life Sciences Electron Microscopy Learning Center (Thermofisher)
- Drug Discovery Using Electron Microscopy (Thermofisher)
- Cryo-EM Atomic Resolution Webinar (Thermofisher)
- CZI for Advanced Biological Imaging workshop
- The Atlas of Bacterial & Archaeal Cell Structure (digital textbook)
- EM learning materials (Franklab at Columbia)
- S²C² Training: Annual Workshops & Lectures
- S2C2 workshops (Archived presentations)
- NRAMM Workshops
- NCCAT Courses
- Cold Spring Harbor Laboratory (CSHL)
- Laboratory for BioMolecular Structure (LBMS) at Brookhaven National Laboratory (BNL)
- Collaborative Computational Project No. 4 (CCP4) Workshop
- MRC EM Course
- LMB Cryo-EM course (2017)
- EMBO courses (2017)
- Birkbeck EMBO course (2019)
- Computational Methods for CryoEM
- EMAN2: Wiki and documentations of EMAN2
- EMAN2.1 – One hour to subnanometer resolution
- RELION 3.0
- DNASTAR Lasergene: Molecular Biology, Protein, and Genomics. For molecular cloning, create protein constructs
- EndNote: format bibliographies, find full text, and search for references
- NoMachine: Securely deliver Mac, Windows, Linux, web-based desktops and applications to any device
- MobaXterm: Enhanced terminal for Windows with X11 server, tabbed SSH client, network tools
- COOT [Crystallographic Object-Oriented Toolkit]: Macromolecular model building, model completion and validation
- CCP4 [Collaborative Computational Project Number 4]: Software for Macromolecular X-Ray Crystallography
- RELION [REgularised LIkelihood OptimisatioN]: Refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM)
- cisTEM [computational imaging system for transmission electron microscopy]: Process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions
- CryoSPARC [Cryo-EM Single Particle Ab-Initio Reconstruction and Classification]: Scientific software platform for cryo-electron microscopy (cryo-EM)
- PHENIX [Python-based Hierarchical ENvironment for Integrated Xtallography]: A comprehensive software package for macromolecular structure determination using crystallographic (X-ray, neutron and electron) and electron cryo-microscopy data
- PyMOL: (Request education copy) Molecular Visualization System
- UCSF Chimera / UCSF ChimeraX: Resource for Biocomputing, Visualization, and Informatics
- Inkscape: Equivalent to Adobe Illustrator
- Gimp: Equivalent to Adobe Photoshop
- SBGrid Consortium: The Liang Lab is a Member Lab of the Consortium. All the lab members has the access to the applications (> 450) listed here.
Cryo-Electron Microscopy (Cryo-EM)
- NCCAT: https://nccat.nysbc.org/
- S2C2: https://cryoem.slac.stanford.edu/
- PNCC: https://pncc.labworks.org/
- NCI: https://www.cancer.gov/research/resources/cryoem
- BNL: https://www.bnl.gov/cryo-em/
- MW: https://cryoem.bio.purdue.edu/
- SECM2: https://www.secm4.org/
Cryo-Electron Tomography (Cryo-ET)
- CEMRC: The UW-Madison Cryo-Electron Microscopy Research Center (CEMRC)
- https://cryoem.wisc.edu/
- https://ccet.colorado.edu/
- https://ncitu.nysbc.org/
- https://scsc.slac.stanford.edu/
X-Ray Crystallography
- IEMC [Robert P. Apkarian Integrated Electron Microscopy Core]: negative stain electron microscopy (nsEM), single-particle cryo-electron microscopy (cryo-EM), cryo-electron tomography (cryo-ET), and scanning electron microscopy (SEM). Pay with PPMS.
- EIPC [Emory Integrated Proteomics Core]: Protein identification (in-gel or in-solution digestion), Interactome analysis (on-bead digestion), Post-translational modifications (PTM), Isobaric (TMT) and Label-free quantification, and Bioinformatic analysis support
- EIGC [Emory Integrated Genomics Core]: CLIA, Epigenetics, Genome Engineering, Genomics, and Passthrough
- Wyatt Technology DynaPro Plate Reader III: High-throughput, automated, dynamic and static light scattering
- NanoTemper Dianthus NT23.Pico: Take on challenging targets with plate-based affinity screenings
- BD FACSMelody™ Cell Sorter: approachable, affordable and automated 4-way cell sorting solution